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Research Topics

Brief description
The experimental activities carried out at the MAMB laboratory in Messina are aimed at the ecological study of microorganisms by applying specific methods for the determination of the abundance and biomass of prokaryotes (Bacteria and Archaea) and phytoplankton, as well as for the morphometric and morphological description at the cellular level. The evaluation of these phenotypic characteristics provides a different approach to the analysis of the ecosystem structure and allows to evaluate the heterogeneity of natural populations. Variations in cell size, shape and morphology are considered sensitive indicators of trophic and climatic changes in ecosystems. The laboratory also carries out analyzes for the quantification of viable (Live / Dead) and respiring (CTC +) cells using specific microbial biomarkers. The laboratory activities are also in support of the EcoBiM and BiogeM Laboratories.

Matrices of interest
The matrices analyzed are mostly attributable to the hydrosphere (marine, river and lake waters, brines), soil, sediments, biofilm, cryosphere (permafrost, snow, sea and continental ice, intrapermafrost brines) and aquatic organisms.

Applied experimental approaches

- determination of biomass of prokaryotes by counting, and morphometric and morphological analysis of cells, using selective filters for DAPI (4 ', 6-diamidine-2-phenylindole);
- determination of cells with primary fluorescence using specific selective filters;
- quantification of cells endowed with respiratory activity (5-Cyano-2,3-ditolyl-tetrazolium chloride-CTC), using selective filters for rhodamine;
- quantification of viable cells with intact membranes (Live / Dead) using selective filters for fluorescein and rhodamine;
- identification of target bacterial cells by immunofluorescence techniques (fluoresceinated antibodies);
- estimation of the relative abundance of microbial phylogenetic groups using CARD-FISH (catalyzed reporter deposition-fluorescence in situ hybridization).

Instrumentation
- Zeiss AXIOPLAN 2 Imaging epifluorescence microscope equipped with AXIOCAMHR (Zeiss) digital video camera and AXIOVISION 3.1 software. Technical features: high pressure mercury vapor lamp (100 W); 100XPlan-Neofluar immersion objective; 10 X eyepieces, one of which has a squared reticle; interchangeable and appropriate optical filter sets for:

DAPI: G365 excitation, FT395 color divider and LP420 barrier filter;
Primary fluorescence: BP450-490 / FT510 / LP515;
Rhodamine: BP546 / 12; FT580; LP590;
Fluorescein: BP450-490; FT510; LP520.
For details: Sig. Giovanna Maimone – giovanna.maimone AT cnr.it

Brief description
The research activities carried out in the HydroChem laboratory in Messina are aimed at studying the marine (coastal and pelagic) and lake water bodies, providing technical-scientific support to the study of biogeochemical cycles and ecological processes also in relation to marine acidification, as well as studies of microbial biomass conducted in the MAMB Laboratory. In particular, analyses of oxygen, salinity, pH, nutrients (nitrogen and phosphorus) and particulate organic carbon are performed. As part of the environmental monitoring activity, several prototype nutrient analyzers were tested both on fixed platform and on boat, at pristine or anthropogenically polluted sites.

Matrices of interest
The analyzed matrices are mostly attributable to the hydrosphere (marine, river and lake waters, brines).

Instrumentation
The laboratory is equipped with basic instrumentation for environmental chemistry [spectrophotometer, spectrofluorimeter, luminometer, digital burette for oxygen titration, centrifuge, salinometer, automatic nutrient analyzers (ammonia, nitrites, nitrates and orthophosphates), extraction hoods, vacuum pumps, filtration septa, magnetic shaker, pHmeter].
For details: Dr. Filippo Azzaro – filippo.azzaro AT cnr.it

Short description
The experimental activities carried out at the BioSoundEcology Lab in Messina are focused on the analysis of biological underwater acoustic sources and the study of the ecological dynamics of marine vertebrates and invertebrates in polar habitats. In addition, the impacts of anthropogenic acoustic sources on the ecology, physiology and behaviour of marine organisms are assessed. In particular, through the study of the sounds generated by animals, the biological and ecological aspects are investigated. The analysis of the noise from human activities provides useful elements for understanding the effects on animals through the study of their behavioural and physiological responses.

Matrices of interest
The activities are mostly ascribable to marine habitats.

Study techniques
At the BioSoundEcology Lab, acoustic data acquisition in field/controlled environment and assessment of animal responses to environmental noise disturbance are carried out, in particular:
- Acoustic data analysis;
- Estimation of underwater noise and environmental acoustic components;
- Evaluation of ecological dynamics through the analysis of the vocalizations of marine animals;
-Analysis of the biochemical, physiological and behavioural responses of animals exposed to acoustic disturbance;
- Study of the acoustic ecology of marine mammals.

Instrumentation
The Lab is equipped with instrumentation for passive acoustic monitoring in the field (hydrophones and autonomous acoustic data acquisition systems) and for studies of the effects of noise on marine organisms in controlled environment (cameras, amplifier, acoustic transducer, software for acoustic and behavioral analysis).
For details: Dr. Francesco Filiciotto – francesco.filiciotto AT cnr.it

Short description
The research activities carried out in the BiogeM laboratory at the Messina headquarters are aimed at studying the marine and terrestrial biological processes that modulate and influence the chemical characteristics of the polar environment and the related cycles of matter and energy, also in relation to climate change.
Particular attention is paid to the evaluation of the role of microorganisms in the global carbon cycle and in the biogeochemical cycles of nutrients (nitrogen, phosphorus) of marine and lacustrine environments, through the study of both productive and degradative processes.
Among these, the activities involved in the decomposition of organic polymers, through microbial enzymatic activities, and the mineralization processes through microbial respiration.
The biogeochemical processes mediated by the microbial component are also being studied in the framework of the cryosphere, in order to understand the ecological significance of microbes in the permafrost, and their ability to maintain an active metabolism in extreme living conditions.
Together with the microbial processes linked to the biological pump and organic matter decomposition, a series of indirect biogeochemical parameters related to phytoplankton and bacterial biomass (Chlorophyll, ATP, lipopolysaccharides-LPS) are also determined.

Matrices of interest
The analyzed matrices are mostly ascribable to the hydrosphere (marine, river and lake waters, brines), soil, sediments, biofilm, cryosphere (permafrost, snow, sea and continental ice, intrapermafrost brines) and aquatic organisms.

Study techniques
At the BiogeM laboratory, measurements are carried out to determine the following parameters:
- Primary phytoplankton production;
- Microbial respiratory activity (consumed O2; produced CO2) (by ETS assay);
- Microbial enzymatic activities (leucin aminopeptidase, beta-glucosidase and alkaline phosphatase) (through fluorogenic substrates);
- Heterotrophic bacterial production;
- Content of total and size-fractionated (pico-, nano- and micro-phytoplanktonic) chlorophyll-a, pheopigments;
- microbial ATP in pico-, nano and microplankton fractions;
- Quantitative analysis of lipopolysaccharides (LPS) by the LAL chromogenic test.

Instrumentation
Spectrofluorimeter, Luminometer, Fluorometer, Spectrophotometer equipped with 96-well plate fluorescence reader, incubator, autoclave, balance, homogenizer, filtration systems, refrigerated centrifuge.
For information: Dr. Gabriella Caruso – gabriella.caruso AT cnr.it

Brief description
Experimental activities carried out at the EcoBiM LAB in Messina are addressed to the ecology and biotechnology of microorganisms, particularly prokaryotes, inhabiting both marine and continental polar habitats. The diversity of microorganisms, their response to environmental stress conditions (deriving from natural or anthropogenic forcing, such as climate change and chemical contamination), the astrobiological implications of life in extreme environments, and their evolution and adaptation in polar environments are among the ecological aspects investigated. EcoBiM researchers are also interested in the evaluation of the metabolic capabilities and biotechnological potentialities of cold-adapted microorganisms, by searching for biomolecules exploitable in industrial applications and bacteria able to degrade organic pollutants at low temperatures.

Matrices of interest
The analyzed matrices are mostly attributable to the hydrosphere (marine, river and lake waters, brines) and cryosphere (permafrost, snow, sea-ice and continental ice, intrapermafrost brines), but soils and sediments are also considered. The study of the interactions between microorganisms and biotic (for example, pelagic and benthic organisms) and abiotic (such as microbial communities colonizing polymeric materials, indicated with the term plastisphere) is of particular interest.

Applied experimental approaches
For the microbiological characterization of extreme environments, similarly to the analytical procedures commonly applied for the study of temperate areas, we use both culture-dependent and -independent (i.e. biomolecular and biochemical) approaches, including:
 - isolation and maintenance in pure culture of bacterial strains;
 - phenotypic (physiological, biochemical and morphological characteristics) and genotypic (analysis of the 16S rRNA sequences and search for functional genes) characterization of cultivable bacteria;
 - screening of bacteria for the production for useful biomolecules (including antibiotics, exopolysaccharides, biosurfactants);
 - evaluation of the metabolic capacities of the microbial communities through miniaturized assays;
 - characterization of the microbial communities by the hybridization in situ with oligonucleotide probes (CARD-FISH);
 - extraction of environmental DNA and RNA for metagenomics and metatrascriptomics studies;
 - preparation of microcosms enriched with organic and inorganic contaminants, and degradation tests.

Instrumentation
The EcoBiM LAB is equipped with basic instrumentation for environmental and applied microbiology (laminar flow cabinet, autoclave, incubators and thermostated baths, centrifuges, filtration systems, sonicators, spectrophotometers, fluorometers) and molecular biology equipment (thermocycler and equipment for electrophoresis).
For details: Dr. Angelina Lo Giudice - angelina.logiudice AT cnr.it

Polar environments are highly biodiverse on a spatial temporal scale as well as at different levels of biological organization, from the molecular level to the entire ecosystem. Recent and rapid climatic and environmental changes give urgency to understanding the response of biological communities to these changes, and their impact in the short and long term. In this context, ISP researchers study the different bio-ecological aspects of the marine and terrestrial ecosystems of both poles. Their research is developed along four main often interconnected research fields.

Where we are
The building, in pure Art Nouveau style, is located on the Straits of Messina, in the shadow of the Montorsoli Lantern. Thanks to this position, it dominates the waters of the Straits and the Port. The building consists of a central body with three floors, which houses offices and studios, and two wings, with the laboratories. The ISP building in Messina is shared with the Institute for Biological Resources and Marine Biotechnologies (CNR-IRBIM) and there is also a park of about 10,000 square meters, where there is the main auditorium in a building that was originally the Royal National Shooting range.
 
How to find us
- By train: if you come from the peninsula, get off at the Villa San Giovanni rail station, then board the BlueJet fast ship heading towards Messina Porto Storico. Otherwise if you come from a Sicilian town, get off at Messina Centrale rail station. Once you arrive in Messina, call our office to arrange transfer by car to the Institute.
- By plane: Catania Fontanarossa is the closest airport. From the airport, take the SAIS-Autolinee bus to Messina Central Station. Once you arrive in Messina, call our office to arrange the transfer by car to the Institute.
- By car: the institute can be reached by car and there is on-site temporary parking available. If you come from the peninsula, once you reach Villa San Giovanni you can board the Caronte ship (runs every 40 minutes) and then, once in Messina, continue by car to the Institute. If, on the other hand, you come from a Sicilian town, take the A18 Messina-Catania, exit at Messina Centro and continue towards the institute following the directions here.

Carniel Sandro M. Sc. in Environmental Sciences, Ph.D. in Environmental Sciences (Oceanography), University of Venice.
Research Scientist at CNR since 1997, Head of Research at the CNR Institute of Polar Sciences, Venice, currently covers the office of Head of Research Division at the NATO STO CMRE in La Spezia. He taught classes at the University of Bologna, Ancona and Bocconi Milan, and was awarded the Office of Naval Research *Command Coin*, addressing the theme of oceans-climate interactions following a multi and inter-disciplinary approach. His main fields of interest deal with physical oceanography of coastal regions and open seas, and explore the relationships that may be linking it with the atmospheric, biologic and bottom counterpart.
The research activity is aiming at the understanding and numerical modelling of the roles of currents, wind and waves on the heat and salt transport in the oceans, and to their variability in the context of an evolving climate, reflecting also anthropic forcings. The paramount importance of the energy distribution between oceanic and atmospheric masses, and the amount of such an energy distributed along the water column, is the kernel of the research activity, tied to: biochemical and sedimentological aspects (associated transport of nutrients and sediments); renewable energies in maritime environment; unexploded ordnance at sea, and risks related to floodings and coastal erosion. Numerical tools adopted are state-of-the-art three-dimensional circulation models, coupled to models of wave generation and propagation, to non cohesive sediment transport modules and biogeochemical modules. Besides benefiting from satellite and remote sensed data used to validate numerical modeling tools, the research activities are characterized by sea-truth data acquired by means of oceanographic vessels, operating in relevant hot-spots particularly relevant in terms of global climate change. The use of CTD probes, wave buoys, current-meters, turbidimeters has been integrated by innovative tools and approaches such as Maritime Unmanned Systems (MUS), seismic oceanography, turbulence measurements via free-falling profilers and measurements of extreme waves using spectroscopic techniques.
Author and co-author of more than 120 papers published on ISI journals with Impact Factor, 2 CNR patents and 3 books. Member of the Editorial Board of the journals Scientific Reports (Nature group), Progress in Oceanography, Ocean Dynamics and Atmosphere.

   ResearchGate    Google Scholar

Casula Marco CTER VI level from November 2014.
From 2014 to 2018 I worked as a technician at the CNR ISMAR Venice participating in numerous oceanographic campaigns and dealing with reagents, waste disposal, material orders and safety in laboratories. Since 2019 I have been a member of the Institute of Polar Sciences of the CNR, carrying out the following tasks:
- Laboratory technician and use of laboratory instruments;
- Collection, preparation and analysis of samples;
- Maintenance and repair of instruments;
- Preparation and transport of equipment for Arctic missions or mountain trips;
- Logistics Management Laboratories and Reagentaries;
- Instructor for orders on the electronic market;
- Appointment by Computer Protocol;
- Control and Technical Management White Rooms (Clean Rooms).

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